Presentations and Authors


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Track:
 

Full talks

Phylogenetic Mixture Models and Optimization by Simulated Annealing PDF
Victor Hanson-Smith, Joe Thornton
Phyloinformatics in the age of Wikipedia PDF
Roderic Page
Biological taxonomy and ontology development: scope and limitations PDF
Nico M. Franz
Diffusion Approximations for Demographic Inference: DaDi PDF
Ryan N Gutenkunst, Ryan D Hernandez, Scott H Williamson, Carlos D Bustamante
Using molecular and morphological data to connect fossils to a phylogeny PDF
Joe Felsenstein
SATe-II: co-estimation of trees and alignments PDF
Kevin Liu, Tandy Warnow, Mark T Holder, Serita Nelesen, Jiaye Yu, Alexis Stamatakis, C. Randall Linder
Mapping phylogeography easily with Biodiverse PDF
Dan Rosauer, Shawn Laffan
CDAO-Store: A New Vision for Data Integration PDF
Brandon Chisham, Trung Le, Enrico Pontelli, Tran Son, Ben Wright
Top-down and bottom-up informatics: who has the high ground? PDF
Vincent Stuart Smith, David Roberts
The Dryad Digital Repository: Published evolutionary data as part of the greater data ecosystem   PDF
Todd Vision
EvoIO: Interop technology meets community science PDF
Arlin Stoltzfus, Nico Cellinese, Karen Cranston, Hilmar Lapp, Sheldon McKay, Enrico Pontelli, Rutger Vos
Community content building for evolutionary biology: Lessons learned from LepTree and Encyclopedia of Life PDF
Cynthia Sims Parr
Phylogenetic operations in Python with Dendropy PDF
Jeet E. Sukumaran, Mark Holder
TreeBASE2: Rise of the Machines PDF
Rutger Aldo Vos, Hilmar Lapp, William Halliday Piel, Val Tannen

Lightning Talks

GMOD for Evolutionary Biology PDF
Robert Buels, Dave Clements
Mining phylogenetic markers through genome comparison and sequence database exploration PDF
Guoqing Lu, Thaine Rowley, Chenhong Li
TOLKIN-WS: Running Bioinformatics Workflows in Web Services PDF
Nico Cellinese, Haijun Zhu, Reed Beaman
My experiment with open science: Why the benefits of sharing go beyond source code PDF
Carl Boettiger
PyPop - a software pipeline for large-scale multilocus population genomics PDF
Alex K Lancaster, Richard M. Single, Owen D. Solberg, Mark P. Nelson, Glenys Thomson
Evaluating the performance of Functional Divergence prediction methods in protein evolution PDF
Daniel Gaston, Andrew J Roger
Gene tree reconciliation: new developments in Bayesian Concordance Analysis with BUCKy PDF
Cecile Ane, Colin N Dewey, Satish Kumar Kotha, Bret R Larget
The Shape and Dimensionality of Phylogenetic Tree-Space Base on Mitochondrial Genomes PDF
James C Wilgenbusch, Wen Huang, Kyle A Gallivan
Leveraging skewed transcript abundance by next-generation sequencing to increase the genomic depth of the tree of life PDF
Chris Todd Hittinger
DNA Bank Network – a virtual linkage of natural history collections' voucher specimens and documentation with physical DNA, sequences, and publications DOC
Birgit Gemeinholzer
Phenex: Ontological Annotation of Phenotypic Diversity PDF
James P. Balhoff, Wasila M. Dahdul, Cartik R. Kothari, Hilmar Lapp, John G. Lundberg, Paula Mabee, Peter E. Midford, Monte Westerfield, Todd J. Vision
Picante: R tools for integrating phylogenies and ecology PDF
Steven William Kembel
Toward a Complete Phyloreferencing Language PDF
T. Michael Keesey
The Gramene Genetic Diversity Module: a resource for genotype-phenotype association analysis in grass species PDF
Charles Chen, Genevieve DeClerck, Terry Casstevens, Ken Youens-Clark, Jon Zhang, Doreen Ware, Pankaj Jaiswal, Susan McCouch, Edward Buckler
Functional Gene Ontology Annotation across Species using PAINT PDF
Suzanna Lewis
Biopython (bio) Geography Module TXT
Nicholas J. Matzke
Bio::Phylo - Phyloinformatic Analysis Using Perl PDF
Rutger Aldo Vos
Visualizing Phylogenies and Metadata at the Scale of One Million Tips PDF
Karen Cranston, Michael Sanderson, Adam Kubach, Kristopher Urie
NEW BIOLOGY: THE DATA CONSERVANCY AND DATA DRIVEN DISCOVERY PDF
Anne Thessen, David Patterson
iBarcode-nextgen: tools for next generation biodiversity analysis TXT
Michael Scott Porter, Mehrdad Hajibabaei
The Teleost Taxonomy Ontology PDF
Peter E. Midford, James P. Balhoff, Wasila Dahdul, Cartik R. Kothari, Hilmar Lapp, John Lundberg, Todd J. Vision, Monte Westerfield, Paula Mabee
Copyrights and digitizing the systematic literature: the horror… the horror… PDF
N. Dean Pentcheff
Effective Phylogenetic Compression with TreeZip PDF
Suzanne Jude Matthews
Mesquite's communication with other analysis tools PDF
Wayne Maddison, David Maddison

Software Bazaar

eFECTIV: Shape analysis using elliptical harmonics PDF
Marie-Julie Favé, Paul Lucien Col
iBarcode-nextgen: tools for next generation biodiversity analysis
Michael Scott Porter, Mehrdad Hajibabaei
Names on Nodes: Automating the Application of Taxonomic Names within a Phylogenetic Context PDF
T. Michael Keesey
GBrowse_syn TXT
Sheldon McKay, Dave Clements, Robert Buels
Functional Gene Ontology Annotation across Species using PAINT PDF
Suzanna Lewis
The Dryad Digital Repository TXT
Ryan Scherle, Kevin Clarke
DNA Bank Network – a virtual linkage of natural history collections' voucher specimens and documentation with physical DNA, sequences, and publications PDF
Birgit Gemeinholzer
Pipefinder - semantic pipelines made easy TXT
Richard John Challis
mt-tRNA-Draw TXT
Mark Youngblood, Susan Masta
The EDIT Platform for Cybertaxonomy DOC
Walter G. Berendsohn
indel-Seq-Gen version 2.0
Cory L Strope, Stephen D Scott, Cate Anderson, Etsuko N Moriyama
Biodiverse, a tool for spatial analysis of biological diversity
Dan Rosauer


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