Full Talks
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Extending Cyberinfrastructure for Gene Tree Reconciliation |
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James Estill, John Bowers, Hariolf Haefele, Adam Kubach, Naim Matasci, Sheldon McKay, Andrew Muir, Dennis Roberts, Sriram Srinivasan, Cécile Ané, Jim Leebens-Mack, Todd Vision |
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The emerging biodiversity data ecosystem: challenges and opportunities |
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Cynthia Parr, Nathan Wilson, Patrick Leary, Katja Schulz, Jennifer Hammock, Richard Allen |
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Publishing Re-usable Phylogenetic Trees, in Theory and Practice |
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Brian O'Meara, Jamie Whitacre, Ross Mounce, Dan F Rosauer, Rutger A Vos, Arlin Stoltzfus |
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The TNRS: a Taxonomic Name Resolution Service for Plants |
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Naim Matasci, Bradley L Boyle, Jerry Lu, Nicole H Hopkins, William Piel, Juan Antonio Raygoza Garay, Martha L Narro, Sonya J Lowry, McKay John Sheldon, Enquist J Brian, Christopher David Freeland |
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BiSciCol: A tagging and tracking infrastructure for Biological Science Collections |
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John Deck, Rob Guralnick, Brian Stucky, Nico Cellinese |
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Lightning Talks
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SYMBIOTA: Providing tools for public engagement with collection information |
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Mary Barkworth, Edward Gilbert, Edward Gilbert |
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Dryad and the archiving of scientific software |
TXT
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Todd Vision |
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treebase R interface |
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Carl Boettiger |
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PhyloPic: An Open Database of Silhouettes with Taxonomic Search Functionality |
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T. Michael Keesey |
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SuiteMSA: Visual Tools for Multiple Sequence Alignment Comparison and Molecular Sequence Simulation |
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Catherine Lee Anderson |
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A Mechanism for Storing, Retrieving, and Evaluating Statistical Properties of Phylogenetic Trees |
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Haleh Ashki |
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Building a Foundation to Enable Semantic Technologies for Phylogenetically-Based Comparative Analyses |
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Mary Panahiazar, Rutger Vos, Enrico Pontelli, Todd Vision, Jim Leebens-Mack |
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GLOOME: Gain Loss Mapping Engine |
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Dorothee Huchon |
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VertNet – Publishing and integrating biodiversity data in the cloud |
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Aaron Steele, Andrew Hill, Rob Guralnick, Carla Cicero, John Wieczorek |
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Map of Life – informatics challenges in storing and co-visualizing disparate distribution data |
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Aaron Steele, Andrew Hill, Rob Guralnick, Walter Jetz, Dan Rosauer, John Wieczorek |
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Hello there! Sharing data between repositories with a handshake |
DOCX
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Ryan Scherle |
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RevBayes: A Preview of the Successor of MrBayes |
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Sebastian Höhna |
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Matching taxonomic and genetic phenotypes in the Phenoscape Knowledge Base |
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Peter E. Midford, James P. Balhoff, Wasila M. Dahdul, Hilmar Lapp, Paula M. Mabee, Todd J. Vision, Monte Westerfield |
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Estimating marginal likelihoods for phylogenetic models in Phycas |
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Mark Holder |
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Software Bazaar
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GLOOME: Gain Loss Mapping Engine |
TXT
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Dorothee Huchon |
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The Phenoscape Knowledgebase |
TXT
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James P. Balhoff |
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PhyloPic: An Open Database of Life Form Silhouettes |
TXT
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T. Michael Keesey |
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SuiteMSA |
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Catherine Lee Anderson |
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MX |
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Matt Yoder, Jim Balhoff |
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SATé: software for simultaneous biomolecular sequence alignment and phylogenetic tree estimation |
TXT
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Mark T. Holder, Jiaye Yu, Jeet Sukumaran, Kevin Liu, C. Randal Linder, Tandy J. Warnow, Serita Nelesen |
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Metagenomics, Barcoding and Biodiversity
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Rapidly assessing eukaryotic biodiversity via high-throughput sequencing: Case studies from marine ecosystems |
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Holly Bik |
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Biocode Ecogenomics and the Moorea Model Ecosystem |
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Neil Davies, Chris Meyer |
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The BARCODE Data Standard as a Cross-Cultural Bridge |
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David Schindel |
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Microbial Inventory Research Across Diverse Aquatic LTERS: MIRADA-LTERS |
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Linda Amaral-Zettler |
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